Intro to Computational Biology

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Centroid

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Intro to Computational Biology

Definition

A centroid is a central point that represents the average position of a set of data points in a space. In clustering algorithms, the centroid acts as the center of a cluster, helping to define the group's location and influence how new data points are categorized within that cluster. It plays a vital role in determining cluster properties and distances between different clusters.

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5 Must Know Facts For Your Next Test

  1. The centroid is calculated by averaging the coordinates of all points in a cluster, which means it can change as new data points are added or removed.
  2. In K-means clustering, the algorithm iteratively updates centroids based on the mean of the assigned data points until convergence is reached.
  3. Centroids can be influenced by outliers; if an outlier is present in the dataset, it may skew the centroid's position away from where most of the data points lie.
  4. Different distance metrics can be used to define how centroids are calculated, impacting the formation and shape of clusters.
  5. In hierarchical clustering, centroids help determine which clusters to merge or split by evaluating their distances from one another.

Review Questions

  • How does the centroid influence the outcome of clustering algorithms like K-means?
    • The centroid significantly influences the outcome of K-means clustering by determining how data points are grouped into clusters. As K-means iterates through its process, it recalculates centroids based on the average position of all assigned points, which then impacts which points belong to each cluster. This dynamic adjustment ensures that clusters represent tightly-knit groups of similar data points, leading to effective categorization and analysis.
  • Compare and contrast the role of centroids in K-means clustering versus hierarchical clustering.
    • In K-means clustering, centroids play a direct role as they represent the center of each predefined cluster and guide the iterative reassignment of data points. In contrast, hierarchical clustering does not explicitly use centroids but rather focuses on distances between clusters to decide on merges or splits. While K-means relies on fixed centroids for optimization, hierarchical methods adaptively build clusters based on proximity without explicit central points.
  • Evaluate how outliers affect the position of a centroid and its subsequent impact on cluster formation in a dataset.
    • Outliers can significantly skew the position of a centroid since it is calculated as the mean of all points within a cluster. If an outlier is far from other data points, it can pull the centroid towards itself, leading to less accurate representations of where most data lies. This misrepresentation can cause clusters to become less cohesive and may result in poor classification performance as new data points may be incorrectly assigned to clusters based on distorted centroids.
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